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» A Parallel Algorithm for Computing Betweenness Centrality
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132
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HPCA
2000
IEEE
15 years 7 months ago
Modified LRU Policies for Improving Second-Level Cache Behavior
Main memory accesses continue to be a significant bottleneck for applications whose working sets do not fit in second-level caches. With the trend of greater associativity in seco...
Wayne A. Wong, Jean-Loup Baer
130
Voted
BMCBI
2005
115views more  BMCBI 2005»
15 years 2 months ago
Statistical distributions of optimal global alignment scores of random protein sequences
Background: The inference of homology from statistically significant sequence similarity is a central issue in sequence alignments. So far the statistical distribution function un...
Hongxia Pang, Jiaowei Tang, Su-Shing Chen, Shiheng...
86
Voted
IPPS
2009
IEEE
15 years 9 months ago
Evaluating the use of GPUs in liver image segmentation and HMMER database searches
In this paper we present the results of parallelizing two life sciences applications, Markov random fieldsbased (MRF) liver segmentation and HMMER’s Viterbi algorithm, using GP...
John Paul Walters, Vidyananth Balu, Suryaprakash K...
105
Voted
CLUSTER
2004
IEEE
15 years 6 months ago
Scalable, high-performance NIC-based all-to-all broadcast over Myrinet/GM
All-to-all broadcast is one of the common collective operations that involve dense communication between all processes in a parallel program. Previously, programmable Network Inte...
Weikuan Yu, Dhabaleswar K. Panda, Darius Buntinas
156
Voted
PPOPP
2011
ACM
14 years 5 months ago
Cooperative reasoning for preemptive execution
We propose a cooperative methodology for multithreaded software, where threads use traditional synchronization idioms such as locks, but additionally document each point of potent...
Jaeheon Yi, Caitlin Sadowski, Cormac Flanagan