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» A Parallel Algorithm for Gene Expressing Data Biclustering
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111
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BMCBI
2010
136views more  BMCBI 2010»
15 years 16 days ago
The IronChip evaluation package: a package of perl modules for robust analysis of custom microarrays
Background: Gene expression studies greatly contribute to our understanding of complex relationships in gene regulatory networks. However, the complexity of array design, producti...
Yevhen Vainshtein, Mayka Sanchez, Alvis Brazma, Ma...
101
Voted
PLDI
2009
ACM
15 years 7 months ago
PetaBricks: a language and compiler for algorithmic choice
It is often impossible to obtain a one-size-fits-all solution for high performance algorithms when considering different choices for data distributions, parallelism, transformati...
Jason Ansel, Cy P. Chan, Yee Lok Wong, Marek Olsze...
BMCBI
2010
157views more  BMCBI 2010»
15 years 16 days ago
SeqTrim: a high-throughput pipeline for pre-processing any type of sequence read
Background: High-throughput automated sequencing has enabled an exponential growth rate of sequencing data. This requires increasing sequence quality and reliability in order to a...
Juan Falgueras, Antonio J. Lara, Noé Fern&a...
CIBCB
2006
IEEE
15 years 4 months ago
Efficient Probe Selection in Microarray Design
Abstract-- The DNA microarray technology, originally developed to measure the level of gene expression, had become one of the most widely used tools in genomic study. Microarrays h...
Leszek Gasieniec, Cindy Y. Li, Paul Sant, Prudence...
93
Voted
BIBE
2005
IEEE
15 years 6 months ago
Diagnostic Rules Induced by an Ensemble Method for Childhood Leukemia
We introduce a new ensemble method based on decision tree to discover significant and diversified rules for subtype classification of childhood acute lymphoblastic leukemia, a ...
Jinyan Li, Huiqing Liu, Ling Li