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» A Parallel Algorithm for Gene Expressing Data Biclustering
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BMCBI
2008
116views more  BMCBI 2008»
15 years 15 days ago
The combination approach of SVM and ECOC for powerful identification and classification of transcription factor
Background: Transcription factors (TFs) are core functional proteins which play important roles in gene expression control, and they are key factors for gene regulation network co...
Guangyong Zheng, Ziliang Qian, Qing Yang, Chaochun...
96
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BMCBI
2004
122views more  BMCBI 2004»
15 years 7 days ago
A comprehensive comparison of comparative RNA structure prediction approaches
Background: An increasing number of researchers have released novel RNA structure analysis and prediction algorithms for comparative approaches to structure prediction. Yet, indep...
Paul P. Gardner, Robert Giegerich
BMCBI
2005
94views more  BMCBI 2005»
15 years 8 days ago
YANA - a software tool for analyzing flux modes, gene-expression and enzyme activities
Background: A number of algorithms for steady state analysis of metabolic networks have been developed over the years. Of these, Elementary Mode Analysis (EMA) has proven especial...
Roland Schwarz, Patrick Musch, Axel von Kamp, Bern...
VLDB
2001
ACM
139views Database» more  VLDB 2001»
15 years 4 months ago
NetCube: A Scalable Tool for Fast Data Mining and Compression
We propose an novel method of computing and storing DataCubes. Our idea is to use Bayesian Networks, which can generate approximate counts for any query combination of attribute v...
Dimitris Margaritis, Christos Faloutsos, Sebastian...
SIGARCH
2008
144views more  SIGARCH 2008»
15 years 9 days ago
A stream chip-multiprocessor for bioinformatics
- Bioinformatics applications such as gene and protein sequence matching algorithms are characterized by the need to process large amounts of data. While uni-processor performance ...
Ravi Kiran Karanam, Arun Ravindran, Arindam Mukher...