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» A Parallel Algorithm for Gene Expressing Data Biclustering
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JMLR
2006
103views more  JMLR 2006»
15 years 16 days ago
MinReg: A Scalable Algorithm for Learning Parsimonious Regulatory Networks in Yeast and Mammals
In recent years, there has been a growing interest in applying Bayesian networks and their extensions to reconstruct regulatory networks from gene expression data. Since the gene ...
Dana Pe'er, Amos Tanay, Aviv Regev
BMCBI
2008
142views more  BMCBI 2008»
15 years 20 days ago
Microarray data mining: A novel optimization-based approach to uncover biologically coherent structures
Background: DNA microarray technology allows for the measurement of genome-wide expression patterns. Within the resultant mass of data lies the problem of analyzing and presenting...
Meng Piao Tan, Erin N. Smith, James R. Broach, Chr...
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ICDE
2009
IEEE
155views Database» more  ICDE 2009»
16 years 2 months ago
Finding Time-Lagged 3D Clusters
Existing 3D clustering algorithms on gene ? sample ? time expression data do not consider the time lags between correlated gene expression patterns. Besides, they either ignore the...
Xin Xu, Ying Lu, Kian-Lee Tan, Anthony K. H. Tung
BMCBI
2008
124views more  BMCBI 2008»
15 years 20 days ago
Literature-aided meta-analysis of microarray data: a compendium study on muscle development and disease
Background: Comparative analysis of expression microarray studies is difficult due to the large influence of technical factors on experimental outcome. Still, the identified diffe...
Rob Jelier, Peter A. C. 't Hoen, Ellen Sterrenburg...
BIOINFORMATICS
2007
137views more  BIOINFORMATICS 2007»
15 years 20 days ago
Annotation-based distance measures for patient subgroup discovery in clinical microarray studies
: Background Clustering algorithms are widely used in the analysis of microarray data. In clinical studies, they are often applied to find groups of co-regulated genes. Clustering...
Claudio Lottaz, Joern Toedling, Rainer Spang