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» A Parallel Algorithm for Gene Expressing Data Biclustering
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BMCBI
2010
178views more  BMCBI 2010»
15 years 20 days ago
Selecting high-dimensional mixed graphical models using minimal AIC or BIC forests
Background: Chow and Liu showed that the maximum likelihood tree for multivariate discrete distributions may be found using a maximum weight spanning tree algorithm, for example K...
David Edwards, Gabriel C. G. de Abreu, Rodrigo Lab...
97
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BMCBI
2007
145views more  BMCBI 2007»
15 years 17 days ago
The utility of MAS5 expression summary and detection call algorithms
Background: Used alone, the MAS5.0 algorithm for generating expression summaries has been criticized for high False Positive rates resulting from exaggerated variance at low inten...
Stuart D. Pepper, Emma K. Saunders, Laura E. Edwar...
103
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BMCBI
2007
179views more  BMCBI 2007»
15 years 20 days ago
Gene selection with multiple ordering criteria
Background: A microarray study may select different differentially expressed gene sets because of different selection criteria. For example, the fold-change and p-value are two co...
James J. Chen, Chen-An Tsai, ShengLi Tzeng, Chun-H...
APIN
2010
108views more  APIN 2010»
15 years 21 days ago
A low variance error boosting algorithm
Abstract. This paper introduces a robust variant of AdaBoost, cwAdaBoost, that uses weight perturbation to reduce variance error, and is particularly effective when dealing with da...
Ching-Wei Wang, Andrew Hunter
107
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BMCBI
2007
148views more  BMCBI 2007»
15 years 17 days ago
WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences
Background: This work addresses the problem of detecting conserved transcription factor binding sites and in general regulatory regions through the analysis of sequences from homo...
Giulio Pavesi, Federico Zambelli, Graziano Pesole