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» A Parallel Algorithm for Gene Expressing Data Biclustering
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CSB
2004
IEEE
131views Bioinformatics» more  CSB 2004»
15 years 4 months ago
Improved Fourier Transform Method for Unsupervised Cell-Cycle Regulated Gene Prediction
Motivation: Cell-cycle regulated gene prediction using microarray time-course measurements of the mRNA expression levels of genes has been used by several researchers. The popular...
Karuturi R. Krishna Murthy, Liu Jian Hua
BMCBI
2007
109views more  BMCBI 2007»
15 years 16 days ago
Discarding duplicate ditags in LongSAGE analysis may introduce significant error
Background: During gene expression analysis by Serial Analysis of Gene Expression (SAGE), duplicate ditags are routinely removed from the data analysis, because they are suspected...
Jeppe Emmersen, Anna M. Heidenblut, Annabeth Laurs...
189
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ICDE
2007
IEEE
141views Database» more  ICDE 2007»
16 years 1 months ago
Monitoring Regular Expressions on Out-of-Order Streams
We present an efficient algorithm for regular expression matching on streams with out of order data, while maintaining a small state and without complete stream reconstruction. We...
Theodore Johnson, S. Muthukrishnan, Irina Rozenbau...
JBI
2006
107views Bioinformatics» more  JBI 2006»
15 years 15 days ago
Knowledge guided analysis of microarray data
To microarray expression data analysis, it is well accepted that biological knowledge-guided clustering techniques show more advantages than pure mathematical techniques. In this ...
Zhuo Fang, Jiong Yang, Yixue Li, Qing-ming Luo, Le...
103
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IDA
2005
Springer
15 years 6 months ago
Biological Cluster Validity Indices Based on the Gene Ontology
With the invention of biotechnological high throughput methods like DNA microarrays and the analysis of the resulting huge amounts of biological data, clustering algorithms gain ne...
Nora Speer, Christian Spieth, Andreas Zell