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» A Parallel Algorithm for Gene Expressing Data Biclustering
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EVOW
2004
Springer
15 years 6 months ago
Evolutionary Search of Thresholds for Robust Feature Set Selection: Application to the Analysis of Microarray Data
Abstract. We deal with two important problems in pattern recognition that arise in the analysis of large datasets. While most feature subset selection methods use statistical techn...
Carlos Cotta, Christian Sloper, Pablo Moscato
BMCBI
2007
197views more  BMCBI 2007»
15 years 19 days ago
Boolean networks using the chi-square test for inferring large-scale gene regulatory networks
Background: Boolean network (BN) modeling is a commonly used method for constructing gene regulatory networks from time series microarray data. However, its major drawback is that...
Haseong Kim, Jae K. Lee, Taesung Park
RECOMB
2004
Springer
16 years 25 days ago
Predicting Genetic Regulatory Response Using Classification: Yeast Stress Response
We present a novel classification-based algorithm called GeneClass for learning to predict gene regulatory response. Our approach is motivated by the hypothesis that in simple orga...
Manuel Middendorf, Anshul Kundaje, Chris Wiggins, ...
117
Voted
BMCBI
2007
180views more  BMCBI 2007»
15 years 16 days ago
Using expression arrays for copy number detection: an example from E. coli
Background: The sequencing of many genomes and tiling arrays consisting of millions of DNA segments spanning entire genomes have made high-resolution copy number analysis possible...
Dmitriy Skvortsov, Diana Abdueva, Michael E. Stitz...
148
Voted
AMAST
2006
Springer
15 years 4 months ago
Reasoning About Data-Parallel Pointer Programs in a Modal Extension of Separation Logic
This paper proposes a modal extension of Separation Logic [8, 11] for reasoning about data-parallel programs that manipulate heap allocated linked data structures. Separation Logi...
Susumu Nishimura