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» A Parallel Algorithm for Gene Expressing Data Biclustering
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103
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BMCBI
2005
112views more  BMCBI 2005»
15 years 12 days ago
Visualization methods for statistical analysis of microarray clusters
Background: The most common method of identifying groups of functionally related genes in microarray data is to apply a clustering algorithm. However, it is impossible to determin...
Matthew A. Hibbs, Nathaniel C. Dirksen, Kai Li, Ol...
IFIP
2004
Springer
15 years 5 months ago
Efficient Algorithms for Handling Molecular Weighted Sequences
Abstract In this paper we introduce the Weighted Suffix Tree, an efficient data structure for computing string regularities in weighted sequences of molecular data. Molecular Wei...
Costas S. Iliopoulos, Christos Makris, Yannis Pana...
92
Voted
IFM
2009
Springer
119views Formal Methods» more  IFM 2009»
15 years 7 months ago
Parallel Processes with Real-Time and Data: The ATLANTIF Intermediate Format
Abstract. To model real-life critical systems, one needs“high-level”languages to express three important concepts: complex data structures, concurrency, and real-time. So far, ...
Jan Stöcker, Frédéric Lang, Hub...
131
Voted
BMCBI
2007
149views more  BMCBI 2007»
15 years 15 days ago
Robust imputation method for missing values in microarray data
Background: When analyzing microarray gene expression data, missing values are often encountered. Most multivariate statistical methods proposed for microarray data analysis canno...
Dankyu Yoon, Eun-Kyung Lee, Taesung Park
114
Voted
FCCM
2007
IEEE
117views VLSI» more  FCCM 2007»
15 years 6 months ago
FPGA Acceleration of Gene Rearrangement Analysis
In this paper we present our work toward FPGA acceleration of phylogenetic reconstruction, a type of analysis that is commonly performed in the fields of systematic biology and co...
Jason D. Bakos