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» A Parameterized Algorithm for Protein Structure Alignment
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IPPS
2006
IEEE
15 years 3 months ago
Multiple sequence alignment by quantum genetic algorithm
In this paper we describe a new approach for the well known problem in bioinformatics: Multiple Sequence Alignment (MSA). MSA is fundamental task as it represents an essential pla...
L. Abdesslem, M. Soham, B. Mohamed
BMCBI
2008
130views more  BMCBI 2008»
14 years 9 months ago
An enhanced partial order curve comparison algorithm and its application to analyzing protein folding trajectories
Background: Understanding how proteins fold is essential to our quest in discovering how life works at the molecular level. Current computation power enables researchers to produc...
Hong Sun, Hakan Ferhatosmanoglu, Motonori Ota, Yus...
BMCBI
2006
130views more  BMCBI 2006»
14 years 9 months ago
4SALE - A tool for synchronous RNA sequence and secondary structure alignment and editing
Background: In sequence analysis the multiple alignment builds the fundament of all proceeding analyses. Errors in an alignment could strongly influence all succeeding analyses an...
Philipp N. Seibel, Tobias Müller, Thomas Dand...
COMPLIFE
2005
Springer
15 years 3 months ago
Fast and Accurate Structural RNA Alignment by Progressive Lagrangian Optimization
During the last few years new functionalities of RNA have been discovered, renewing the need for computational tools for their analysis. To this respect, multiple sequence alignmen...
Markus Bauer, Gunnar W. Klau, Knut Reinert
ICDM
2006
IEEE
164views Data Mining» more  ICDM 2006»
15 years 3 months ago
Unsupervised Learning of Tree Alignment Models for Information Extraction
We propose an algorithm for extracting fields from HTML search results. The output of the algorithm is a database table– a data structure that better lends itself to high-level...
Philip Zigoris, Damian Eads, Yi Zhang