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» A Parameterized Algorithm for Protein Structure Alignment
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JCB
2008
71views more  JCB 2008»
14 years 9 months ago
Feedback Algorithm and Web-Server for Protein Structure Alignment
Zhiyu Zhao, Bin Fu, Francisco J. Alanis, Christoph...
76
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BMCBI
2010
139views more  BMCBI 2010»
14 years 9 months ago
CMASA: an accurate algorithm for detecting local protein structural similarity and its application to enzyme catalytic site anno
Background: The rapid development of structural genomics has resulted in many "unknown function" proteins being deposited in Protein Data Bank (PDB), thus, the functiona...
Gong-Hua Li, Jing-Fei Huang
81
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BMCBI
2008
103views more  BMCBI 2008»
14 years 9 months ago
TOPS++FATCAT: Fast flexible structural alignment using constraints derived from TOPS+ Strings Model
Background: Protein structure analysis and comparison are major challenges in structural bioinformatics. Despite the existence of many tools and algorithms, very few of them have ...
Mallika Veeramalai, Yuzhen Ye, Adam Godzik
BMCBI
2007
136views more  BMCBI 2007»
14 years 9 months ago
Comparison of protein structures by growing neighborhood alignments
Background: Design of protein structure comparison algorithm is an important research issue, having far reaching implications. In this article, we describe a protein structure com...
Sourangshu Bhattacharya, Chiranjib Bhattacharyya, ...