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» A Part-of-Speech-Based Alignment Algorithm
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LATA
2010
Springer
15 years 9 months ago
A Randomized Numerical Aligner (rNA)
With the advent of new sequencing technologies able to produce an enormous quantity of short genomic sequences, new tools able to search for them inside a references sequence genom...
Alberto Policriti, Alexandru I. Tomescu, Francesco...
145
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BMCBI
2004
94views more  BMCBI 2004»
15 years 4 months ago
GASP: Gapped Ancestral Sequence Prediction for proteins
Background: The prediction of ancestral protein sequences from multiple sequence alignments is useful for many bioinformatics analyses. Predicting ancestral sequences is not a sim...
Richard J. Edwards, Denis C. Shields
119
Voted
WSCG
2003
154views more  WSCG 2003»
15 years 5 months ago
Direction Fields over Point-Sampled Geometry
We describe techniques to establish local frames over point-sampled manifold surfaces. The tangential alignment of local frames is determined using a wave front algorithm starting...
Marc Alexa, Tobias Klug, Carsten Stoll
WWW
2011
ACM
14 years 11 months ago
ReadAlong: reading articles and comments together
We propose a new paradigm for displaying comments: showing comments alongside parts of the article they correspond to. We evaluate the effectiveness of various approaches for thi...
Dyut Kumar Sil, Srinivasan H. Sengamedu, Chiranjib...
SC
2003
ACM
15 years 9 months ago
A Million-Fold Speed Improvement in Genomic Repeats Detection
This paper presents a novel, parallel algorithm for generating top alignments. Top alignments are used for finding internal repeats in biological sequences like proteins and gene...
John W. Romein, Jaap Heringa, Henri E. Bal