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» A Part-of-Speech-Based Alignment Algorithm
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JPDC
2007
167views more  JPDC 2007»
15 years 3 months ago
On the design of high-performance algorithms for aligning multiple protein sequences on mesh-based multiprocessor architectures
In this paper, we address the problem of multiple sequence alignment (MSA) for handling very large number of proteins sequences on mesh-based multiprocessor architectures. As the ...
Diana H. P. Low, Bharadwaj Veeravalli, David A. Ba...
COLING
1994
15 years 5 months ago
A Part-of-Speech-Based Alignment Algorithm
To align bilingual texts becomes a crucial issue recently. Rather than using length-based or translation-based criterion, a part-of-speech-based criterion is proposed. We postulat...
Kuang-Hua Chen, Hsin-Hsi Chen
COCOON
2008
Springer
15 years 5 months ago
Sequence Alignment Algorithms for Run-Length-Encoded Strings
A unified framework is applied to solving various sequence comparison problems for run-length encoded strings. All of these algorithms take O(min{mn , m n}) time and O(max{m, n}) s...
Guan-Shieng Huang, Jia Jie Liu, Yue-Li Wang
AAAI
2000
15 years 5 months ago
PROMPT: Algorithm and Tool for Automated Ontology Merging and Alignment
Researchers in the ontology-design field have developed the content for ontologies in many domain areas. Recently, ontologies have become increasingly common on the WorldWide Web ...
Natalya Fridman Noy, Mark A. Musen
BIBE
2007
IEEE
147views Bioinformatics» more  BIBE 2007»
15 years 10 months ago
A New Alignment-Independent Algorithm for Clustering Protein Sequences
—The rapid burgeoning of available protein data makes the use of clustering within families of proteins increasingly important, the challenge is to identify subfamilies of evolut...
Abdellali Kelil, Shengrui Wang, Ryszard Brzezinski