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» A Part-of-Speech-Based Alignment Algorithm
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RECOMB
2008
Springer
16 years 4 months ago
Fast and Accurate Alignment of Multiple Protein Networks
Comparative analysis of protein networks has proven to be a powerful approach for elucidating network structure and predicting protein function and interaction. A fundamental chall...
Maxim Kalaev, Vineet Bafna, Roded Sharan
ARC
2007
Springer
123views Hardware» more  ARC 2007»
15 years 8 months ago
Multiple Sequence Alignment Using Reconfigurable Computing
The alignment of multiple protein (or DNA) sequences is a current problem in Bioinformatics. ClustalW is the most popular heuristic algorithm for multiple sequence alignment. Pairw...
Carlos R. Erig Lima, Heitor S. Lopes, Maiko R. Mor...
140
Voted
ACL
1998
15 years 5 months ago
A Simple Hybrid Aligner for Generating Lexical Correspondences in Parallel Texts
We present an algorithm for bilingual word alignment that extends previous work by treating multi-word candidates on a par with single words, and combining some simple assumptions...
Lars Ahrenberg, Mikael Andersson, Magnus Merkel
CSB
2004
IEEE
208views Bioinformatics» more  CSB 2004»
15 years 7 months ago
Pair Stochastic Tree Adjoining Grammars for Aligning and Predicting Pseudoknot RNA Structures
Motivation: Since the whole genome sequences for many species are currently available, computational predictions of RNA secondary structures and computational identifications of t...
Hiroshi Matsui, Kengo Sato, Yasubumi Sakakibara
BMCBI
2005
115views more  BMCBI 2005»
15 years 3 months ago
Statistical distributions of optimal global alignment scores of random protein sequences
Background: The inference of homology from statistically significant sequence similarity is a central issue in sequence alignments. So far the statistical distribution function un...
Hongxia Pang, Jiaowei Tang, Su-Shing Chen, Shiheng...