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» A Part-of-Speech-Based Alignment Algorithm
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CJ
2008
90views more  CJ 2008»
14 years 9 months ago
Parameterized Complexity and Biopolymer Sequence Comparison
The article surveys parameterized algorithms and complexities for computational tasks on biopolymer sequences, including the problems of longest common subsequence, shortest commo...
Liming Cai, Xiuzhen Huang, Chunmei Liu, Frances A....
BMCBI
2007
153views more  BMCBI 2007»
14 years 9 months ago
Lower bounds on multiple sequence alignment using exact 3-way alignment
Background: Multiple sequence alignment is fundamental. Exponential growth in computation time appears to be inevitable when an optimal alignment is required for many sequences. E...
Charles J. Colbourn, Sudhir Kumar
ACL
2004
14 years 11 months ago
Aligning words using matrix factorisation
Aligning words from sentences which are mutual translations is an important problem in different settings, such as bilingual terminology extraction, Machine Translation, or projec...
Cyril Goutte, Kenji Yamada, Éric Gaussier
WABI
2004
Springer
106views Bioinformatics» more  WABI 2004»
15 years 2 months ago
Suboptimal Local Alignments Across Multiple Scoring Schemes
Abstract. Sequence alignment algorithms have a long standing tradition in bioinformatics. In this paper, we formulate an extension to existing local alignment algorithms: local ali...
Morris Michael, Christoph Dieterich, Jens Stoye
AINA
2006
IEEE
15 years 3 months ago
Partitioned optimization algorithms for multiple sequence alignment
Multiple sequence alignment is an important and difficult problem in molecular biology and bioinformatics. In this paper, we propose a partitioning approach that significantly impr...
Yixin Chen, Yi Pan, Juan Chen, Wei Liu, Ling Chen