Sciweavers

1375 search results - page 53 / 275
» A Part-of-Speech-Based Alignment Algorithm
Sort
View
148
Voted
BMCBI
2005
162views more  BMCBI 2005»
15 years 3 months ago
Accelerated probabilistic inference of RNA structure evolution
Background: Pairwise stochastic context-free grammars (Pair SCFGs) are powerful tools for evolutionary analysis of RNA, including simultaneous RNA sequence alignment and secondary...
Ian Holmes
ECCV
2006
Springer
16 years 5 months ago
Aligning Sequences and Actions by Maximizing Space-Time Correlations
Abstract. We introduced an algorithm for sequence alignment, based on maximizing local space-time correlations. Our algorithm aligns sequences of the same action performed at diffe...
Yaron Ukrainitz, Michal Irani
BIBM
2008
IEEE
110views Bioinformatics» more  BIBM 2008»
15 years 10 months ago
Genome Alignments Using MPI-LAGAN
We develop a parallel algorithm for a widely used whole genome alignment method called LAGAN. We use the MPI-based protocol to develop parallel solutions for two phases of the alg...
Ruinan Zhang, Huzefa Rangwala, George Karypis
EUC
2006
Springer
15 years 7 months ago
Optimizing Scheduling Stability for Runtime Data Alignment
Runtime data alignment has been paid attention recently since it can allocate data segment to processors dynamically according to applications' requirement. One of the key opt...
Ching-Hsien Hsu, Chao-Yang Lan, Shih-Chang Chen
BMCBI
2007
134views more  BMCBI 2007»
15 years 4 months ago
Efficient pairwise RNA structure prediction using probabilistic alignment constraints in Dynalign
Background: Joint alignment and secondary structure prediction of two RNA sequences can significantly improve the accuracy of the structural predictions. Methods addressing this p...
Arif Ozgun Harmanci, Gaurav Sharma, David H. Mathe...