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» A Part-of-Speech-Based Alignment Algorithm
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ICASSP
2008
IEEE
15 years 6 months ago
Probabilistic structural alignment of RNA sequences
We propose an algorithm for estimating the common secondary structure, alignment, and posterior base pairing probabilities for two RNA sequences. A definition of structural align...
Arif Ozgun Harmanci, Gaurav Sharma, David H. Mathe...
INTERSPEECH
2010
14 years 6 months ago
Combining many alignments for speech to speech translation
Alignment combination (symmetrization) has been shown to be useful for improving Machine Translation (MT) models. Most existing alignment combination techniques are based on heuri...
Sameer Maskey, Steven J. Rennie, Bowen Zhou
BMCBI
2005
125views more  BMCBI 2005»
14 years 11 months ago
DIALIGN-T: An improved algorithm for segment-based multiple sequence alignment
Background: We present a complete re-implementation of the segment-based approach to multiple protein alignment that contains a number of improvements compared to the previous ver...
Amarendran R. Subramanian, Jan Weyer-Menkhoff, Mic...
BMCBI
2010
143views more  BMCBI 2010»
14 years 9 months ago
A genome alignment algorithm based on compression
Background: Traditional genome alignment methods consider sequence alignment as a variation of the string edit distance problem, and perform alignment by matching characters of th...
Minh Duc Cao, Trevor I. Dix, Lloyd Allison
GECCO
2003
Springer
129views Optimization» more  GECCO 2003»
15 years 5 months ago
Evolutionary Two-Dimensional DNA Sequence Alignment
This article presents a model for DNA sequence alignment. In our model, a finite state automaton writes two-dimensional maps of nucleotide sequences. An evolutionary method for se...
Edgar E. Vallejo, Fernando Ramos