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» A Part-of-Speech-Based Alignment Algorithm
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PLDI
2004
ACM
15 years 9 months ago
Vectorization for SIMD architectures with alignment constraints
When vectorizing for SIMD architectures that are commonly employed by today’s multimedia extensions, one of the new challenges that arise is the handling of memory alignment. Pr...
Alexandre E. Eichenberger, Peng Wu, Kevin O'Brien
EVOW
2008
Springer
15 years 6 months ago
Divide, Align and Full-Search for Discovering Conserved Protein Complexes
Advances in modern technologies for measuring protein-protein interaction (PPI) has boosted research in PPI networks analysis and comparison. One of the challenging problems in com...
Pavol Jancura, Jaap Heringa, Elena Marchiori
SSDBM
2005
IEEE
100views Database» more  SSDBM 2005»
15 years 10 months ago
An Information Theoretic Model for Database Alignment
As with many large organizations, the Government's data is split in many different ways and is collected at different times by different people. The resulting massive data he...
Patrick Pantel, Andrew Philpot, Eduard H. Hovy
BMCBI
2010
101views more  BMCBI 2010»
15 years 4 months ago
Enrichment of homologs in insignificant BLAST hits by co-complex network alignment
Background: Homology is a crucial concept in comparative genomics. The algorithm probably most widely used for homology detection in comparative genomics, is BLAST. Usually a stri...
Like Fokkens, Sandra M. C. Botelho, Jos Boekhorst,...
IPPS
2002
IEEE
15 years 9 months ago
Aligning Two Fragmented Sequences
Upon completion of the human and mouse genome sequences, world-wide sequencing capacity will turn to other complex organisms. Current strategies call for many of these genomes to ...
Vamsi Veeramachaneni, Piotr Berman, Webb Miller