Protein sequence alignments are more reliable the shorter the evolutionary distance. Here, we align distantly related proteins using many closely spaced intermediate sequences as ...
Abstract. Arc-annotated sequences are useful for representing structural information of RNAs and have been extensively used for comparing RNA structures in both terms of sequence a...
Decision trees are widely disseminated as an effective solution for classification tasks. Decision tree induction algorithms have some limitations though, due to the typical strat...
—Multi-objective optimization is an essential and challenging topic in the domains of engineering and computation because real-world problems usually include several conflicting...
Mathematical modeling for gene regulative networks (GRNs) provides an effective tool for hypothesis testing in biology. A necessary step in setting up such models is the estimati...