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BMCBI
2007
160views more  BMCBI 2007»
15 years 9 hour ago
Identifying protein complexes directly from high-throughput TAP data with Markov random fields
Background: Predicting protein complexes from experimental data remains a challenge due to limited resolution and stochastic errors of high-throughput methods. Current algorithms ...
Wasinee Rungsarityotin, Roland Krause, Arno Sch&ou...
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BMCBI
2007
135views more  BMCBI 2007»
15 years 8 hour ago
RECOVIR: An application package to automatically identify some single stranded RNA viruses using capsid protein residues that un
Background: Most single stranded RNA (ssRNA) viruses mutate rapidly to generate large number of strains having highly divergent capsid sequences. Accurate strain recognition in un...
Dianhui Zhu, George E. Fox, Sugoto Chakravarty
BMCBI
2006
75views more  BMCBI 2006»
14 years 12 months ago
A machine learning strategy to identify candidate binding sites in human protein-coding sequence
Background: The splicing of RNA transcripts is thought to be partly promoted and regulated by sequences embedded within exons. Known sequences include binding sites for SR protein...
Thomas Down, Bernard Leong, Tim J. P. Hubbard
SIAMDM
2008
72views more  SIAMDM 2008»
14 years 11 months ago
Prolific Codes with the Identifiable Parent Property
Let C be a code of length n over an alphabet of size q. A word d is a descendant of a pair of codewords x, y C if di {xi, yi} for 1 i n. A code C is an identifiable parent prop...
Simon R. Blackburn, Tuvi Etzion, Siaw-Lynn Ng
BMCBI
2005
104views more  BMCBI 2005»
14 years 11 months ago
An integrated approach of immunogenomics and bioinformatics to identify new Tumor Associated Antigens (TAA) for mammary cancer i
Background: Neoplastic transformation is a multistep process in which distinct gene products of specific cell regulatory pathways are involved at each stage. Identification of ove...
Federica Cavallo, Annalisa Astolfi, Manuela Iezzi,...