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» A Query System in a Biological Database
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NAR
2008
223views more  NAR 2008»
14 years 9 months ago
AtPID: Arabidopsis thaliana protein interactome database - an integrative platform for plant systems biology
Arabidopsis thaliana Protein Interactome Database (AtPID) is an object database that integrates data from several bioinformatics prediction methods and manually collected informat...
Jian Cui, Peng Li, Guang Li, Feng Xu, Chen Zhao, Y...
ICDE
2008
IEEE
146views Database» more  ICDE 2008»
15 years 10 months ago
Explaining and Reformulating Authority Flow Queries
Authority flow is an effective ranking mechanism for answering queries on a broad class of data. Systems have been developed to apply this principle on the Web (PageRank and topic ...
Ramakrishna Varadarajan, Vagelis Hristidis, Louiqa...
BIODATAMINING
2008
117views more  BIODATAMINING 2008»
14 years 9 months ago
Search extension transforms Wiki into a relational system: A case for flavonoid metabolite database
Background: In computer science, database systems are based on the relational model founded by Edgar Codd in 1970. On the other hand, in the area of biology the word 'databas...
Masanori Arita, Kazuhiro Suwa
DILS
2006
Springer
15 years 1 months ago
An Extensible Light-Weight XML-Based Monitoring System for Sequence Databases
Life science researchers want biological information in their interest to become available to them as soon as possible. A monitoring system is a solution that relieves biologists f...
Dieter Van de Craen, Frank Neven, Kerstin Koch
VLDB
2002
ACM
83views Database» more  VLDB 2002»
14 years 9 months ago
Searching on the Secondary Structure of Protein Sequences
In spite of the many decades of progress in database research, surprisingly scientists in the life sciences community still struggle with inefficient and awkward tools for queryin...
Laurie Hammel, Jignesh M. Patel