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» A Query System in a Biological Database
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ICDT
2003
ACM
150views Database» more  ICDT 2003»
15 years 2 months ago
Bioinformatics Adventures in Database Research
Informatics has helped launch molecular biology into the genomic era. It appears certain that informatics will remain a major contributor to molecular biology in the post-genome er...
Jinyan Li, See-Kiong Ng, Limsoon Wong
EDBT
2009
ACM
241views Database» more  EDBT 2009»
15 years 4 months ago
GADDI: distance index based subgraph matching in biological networks
Currently, a huge amount of biological data can be naturally represented by graphs, e.g., protein interaction networks, gene regulatory networks, etc. The need for indexing large ...
Shijie Zhang, Shirong Li, Jiong Yang
BMCBI
2005
131views more  BMCBI 2005»
14 years 9 months ago
Critical evaluation of the JDO API for the persistence and portability requirements of complex biological databases
Background: Complex biological database systems have become key computational tools used daily by scientists and researchers. Many of these systems must be capable of executing on...
Marko Srdanovic, Ulf Schenk, Michael Schwieger, Fa...
DILS
2005
Springer
15 years 2 months ago
The Multiple Roles of Ontologies in the BioMediator Data Integration System
BioMediator is a data integration system that provides a common interface to multiple Internet-accessible databases containing information about genetics and molecular biology. Ont...
Peter Mork, Ron Shaker, Peter Tarczy-Hornoch
86
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CIKM
2008
Springer
14 years 11 months ago
Modeling and exploiting query interactions in database systems
The typical workload in a database system consists of a mixture of multiple queries of different types, running concurrently and interacting with each other. Hence, optimizing per...
Mumtaz Ahmad, Ashraf Aboulnaga, Shivnath Babu, Kam...