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» A Query System in a Biological Database
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SAC
2003
ACM
15 years 5 months ago
Similar_Join: Extending DBMS with a Bio-specific Operator
Existing sequence comparison software applications lack automation, abstraction, performance, and flexibility. Users need a new way of studying and applying sequence comparisons i...
Jake Yue Chen, John V. Carlis
BMCBI
2002
109views more  BMCBI 2002»
14 years 11 months ago
Kangaroo - A pattern-matching program for biological sequences
Background: Biologists are often interested in performing a simple database search to identify proteins or genes that contain a well-defined sequence pattern. Many databases do no...
Doron Betel, Christopher W. V. Hogue
SIGMOD
2004
ACM
109views Database» more  SIGMOD 2004»
15 years 11 months ago
Piers: An Efficient Model for Similarity Search in DNA Sequence Databases
Growing interest in genomic research has resulted in the creation of huge biological sequence databases. In this paper, we present a hash-based pier model for efficient homology s...
Xia Cao, Shuai Cheng Li, Beng Chin Ooi, Anthony K....
APBC
2003
15 years 1 months ago
Towards Transparent Access to Multiple Biological Databanks
Nowadays, biologists use a number of large biological databanks to find relevant information for their research. Users of these databanks face a number of problems. One problem i...
Patrick Lambrix, Vaida Jakoniene
SIGMOD
2007
ACM
141views Database» more  SIGMOD 2007»
15 years 11 months ago
Assisted querying using instant-response interfaces
We demonstrate a novel query interface that enables users to construct a rich search query without any prior knowledge of the underlying schema or data. The interface, which is in...
Arnab Nandi, H. V. Jagadish