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» A Query System in a Biological Database
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SAC
2003
ACM
15 years 2 months ago
Similar_Join: Extending DBMS with a Bio-specific Operator
Existing sequence comparison software applications lack automation, abstraction, performance, and flexibility. Users need a new way of studying and applying sequence comparisons i...
Jake Yue Chen, John V. Carlis
107
Voted
BMCBI
2002
109views more  BMCBI 2002»
14 years 9 months ago
Kangaroo - A pattern-matching program for biological sequences
Background: Biologists are often interested in performing a simple database search to identify proteins or genes that contain a well-defined sequence pattern. Many databases do no...
Doron Betel, Christopher W. V. Hogue
SIGMOD
2004
ACM
109views Database» more  SIGMOD 2004»
15 years 9 months ago
Piers: An Efficient Model for Similarity Search in DNA Sequence Databases
Growing interest in genomic research has resulted in the creation of huge biological sequence databases. In this paper, we present a hash-based pier model for efficient homology s...
Xia Cao, Shuai Cheng Li, Beng Chin Ooi, Anthony K....
APBC
2003
14 years 10 months ago
Towards Transparent Access to Multiple Biological Databanks
Nowadays, biologists use a number of large biological databanks to find relevant information for their research. Users of these databanks face a number of problems. One problem i...
Patrick Lambrix, Vaida Jakoniene
SIGMOD
2007
ACM
141views Database» more  SIGMOD 2007»
15 years 9 months ago
Assisted querying using instant-response interfaces
We demonstrate a novel query interface that enables users to construct a rich search query without any prior knowledge of the underlying schema or data. The interface, which is in...
Arnab Nandi, H. V. Jagadish