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» A Query System in a Biological Database
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BMCBI
2002
120views more  BMCBI 2002»
14 years 11 months ago
tacg - a grep for DNA
Background: Pattern matching is the core of bioinformatics; it is used in database searching, restriction enzyme mapping, and finding open reading frames. It is done repeatedly ov...
Harry Mangalam
BMCBI
2010
123views more  BMCBI 2010»
14 years 6 months ago
Predicting conserved protein motifs with Sub-HMMs
Background: Profile HMMs (hidden Markov models) provide effective methods for modeling the conserved regions of protein families. A limitation of the resulting domain models is th...
Kevin Horan, Christian R. Shelton, Thomas Girke
VLDB
2005
ACM
136views Database» more  VLDB 2005»
15 years 5 months ago
iMeMex: Escapes from the Personal Information Jungle
Modern computer work stations provide thousands of applications that store data in >100.000 files on the file system of the underlying OS. To handle these files data process...
Jens-Peter Dittrich, Marcos Antonio Vaz Salles, Do...
BMCBI
2010
193views more  BMCBI 2010»
14 years 12 months ago
caGrid Workflow Toolkit: A Taverna based workflow tool for cancer Grid
Background: In biological and medical domain, the use of web services made the data and computation functionality accessible in a unified manner, which helped automate the data pi...
Wei Tan, Ravi K. Madduri, Aleksandra Nenadic, Stia...
WWW
2008
ACM
16 years 15 days ago
Service-oriented data denormalization for scalable web applications
Many techniques have been proposed to scale web applications. However, the data interdependencies between the database queries and transactions issued by the applications limit th...
Zhou Wei, Dejun Jiang, Guillaume Pierre, Chi-Hung ...