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» A Reconfigurable Computing Model for Biological Research
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BMCBI
2007
172views more  BMCBI 2007»
15 years 2 months ago
msBayes: Pipeline for testing comparative phylogeographic histories using hierarchical approximate Bayesian computation
Background: Although testing for simultaneous divergence (vicariance) across different population-pairs that span the same barrier to gene flow is of central importance to evoluti...
Michael J. Hickerson, Eli Stahl, Naoki Takebayashi
RECOMB
2005
Springer
16 years 2 months ago
Pairwise Local Alignment of Protein Interaction Networks Guided by Models of Evolution
Abstract. With ever increasing amount of available data on protein-protein interaction (PPI) networks and research revealing that these networks evolve at a modular level, discover...
Mehmet Koyutürk, Ananth Grama, Wojciech Szpan...
108
Voted
IANDC
2006
121views more  IANDC 2006»
15 years 1 months ago
Comparing operational models of name-passing process calculi
We study three operational models of name-passing process calculi: coalgebras on (pre)sheaves, indexed labelled transition systems, and history dependent automata. The coalgebraic...
Marcelo P. Fiore, Sam Staton
104
Voted
BIB
2010
147views more  BIB 2010»
15 years 2 months ago
Toward the dynamic interactome: it's about time
Dynamic molecular interactions play a central role in regulating the functioning of cells and organisms.The availability of experimentally determined large-scale cellular networks...
Teresa M. Przytycka, Mona Singh, Donna K. Slonim
BMCBI
2010
232views more  BMCBI 2010»
15 years 2 months ago
LucidDraw: Efficiently visualizing complex biochemical networks within MATLAB
Background: Biochemical networks play an essential role in systems biology. Rapidly growing network data and e research activities call for convenient visualization tools to aid i...
Sheng He, Juan Mei, Guiyang Shi, Zhengxiang Wang, ...