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» A Refactoring Approach to Parallelism
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IPPS
2009
IEEE
15 years 10 months ago
Dynamic parallelization for RNA structure comparison
In this paper we describe the parallelization of a dynamic programming algorithm used to find common RNA secondary structures including pseudoknots and similar structures. The se...
Eric Snow, Eric Aubanel, Patricia Evans
IPPS
2009
IEEE
15 years 10 months ago
Parallel reconstruction of neighbor-joining trees for large multiple sequence alignments using CUDA
Computing large multiple protein sequence alignments using progressive alignment tools such as ClustalW requires several hours on state-of-the-art workstations. ClustalW uses a th...
Yongchao Liu, Bertil Schmidt, Douglas L. Maskell
145
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ICCS
2009
Springer
15 years 10 months ago
Modular, Fine-Grained Adaptation of Parallel Programs
We present a modular approach to realizing fine-grained adaptation of program behavior in a parallel environment. Using a compositional framework based on function call intercepti...
Pilsung Kang 0002, Naresh K. C. Selvarasu, Naren R...
ICMCS
2007
IEEE
123views Multimedia» more  ICMCS 2007»
15 years 9 months ago
Efficient Parallelization of H.264 Decoding with Macro Block Level Scheduling
The H.264 decoder has a sequential, control intensive front end that makes it difficult to leverage the potential performance of emerging manycore processors. Preparsing is a fun...
Jike Chong, Nadathur Satish, Bryan C. Catanzaro, K...
127
Voted
ICPP
2007
IEEE
15 years 9 months ago
Parallel Algorithms for Bayesian Indoor Positioning Systems
We present two parallel algorithms and their Unified Parallel C implementations for Bayesian indoor positioning systems. Our approaches are founded on Markov Chain Monte Carlo si...
Konstantinos Kleisouris, Richard P. Martin