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BMCBI
2007
120views more  BMCBI 2007»
14 years 10 months ago
Non-coding sequence retrieval system for comparative genomic analysis of gene regulatory elements
Background: Completion of the human genome sequence along with other species allows for greater understanding of the biochemical mechanisms and processes that govern healthy as we...
Sung Tae Doh, Yunyu Zhang, Matthew H. Temple, Li C...
BMCBI
2007
149views more  BMCBI 2007»
14 years 10 months ago
Identification of tissue-specific cis-regulatory modules based on interactions between transcription factors
Background: Evolutionary conservation has been used successfully to help identify cis-acting DNA regions that are important in regulating tissue-specific gene expression. Motivate...
Xueping Yu, Jimmy J. Lin, Donald J. Zack, Jiang Qi...
BMCBI
2007
216views more  BMCBI 2007»
14 years 10 months ago
A replica exchange Monte Carlo algorithm for protein folding in the HP model
Background: The ab initio protein folding problem consists of predicting protein tertiary structure from a given amino acid sequence by minimizing an energy function; it is one of...
Chris Thachuk, Alena Shmygelska, Holger H. Hoos
EOR
2006
107views more  EOR 2006»
14 years 10 months ago
Longest path analysis in networks of queues: Dynamic scheduling problems
In this paper, we develop an acyclic network of queues for the design of a dynamic flow shop, where each service station represents a machine. The orders arrive at the input stati...
Amir Azaron, Hideki Katagiri, Kosuke Kato, Masatos...
BMCBI
2007
142views more  BMCBI 2007»
14 years 10 months ago
SABERTOOTH: protein structural alignment based on a vectorial structure representation
Background: The task of computing highly accurate structural alignments of proteins in very short computation time is still challenging. This is partly due to the complexity of pr...
Florian Teichert, Ugo Bastolla, Markus Porto
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