Sciweavers

133 search results - page 13 / 27
» A SAT-Based Approach to Multiple Sequence Alignment
Sort
View
GCB
2004
Springer
139views Biometrics» more  GCB 2004»
15 years 5 months ago
Graph Alignments: A New Concept to Detect Conserved Regions in Protein Active Sites
: We introduce the novel concept of graph alignment, a generalization of graph isomorphism that is motivated by the commonly used multiple sequence alignments. Graph alignments and...
Nils Weskamp, Eyke Hüllermeier, Daniel Kuhn, ...
ISMIR
2005
Springer
123views Music» more  ISMIR 2005»
15 years 5 months ago
Polyphonic Musical Sequence Alignment for Database Search
Finding the best matching database target to a melodic query has been of great interest in the music IR world. The string alignment paradigm works well for this task when comparin...
Bryan Pardo, Manan Sanghi
BMCBI
2004
94views more  BMCBI 2004»
15 years 6 days ago
GASP: Gapped Ancestral Sequence Prediction for proteins
Background: The prediction of ancestral protein sequences from multiple sequence alignments is useful for many bioinformatics analyses. Predicting ancestral sequences is not a sim...
Richard J. Edwards, Denis C. Shields
129
Voted
BMCBI
2010
121views more  BMCBI 2010»
15 years 14 days ago
MS4 - Multi-Scale Selector of Sequence Signatures: An alignment-free method for classification of biological sequences
Background: While multiple alignment is the first step of usual classification schemes for biological sequences, alignment-free methods are being increasingly used as alternatives...
Eduardo Corel, Florian Pitschi, Ivan Laprevotte, G...
151
Voted
BMCBI
2011
14 years 4 months ago
Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation
Background: The Smith-Waterman algorithm for local sequence alignment is more sensitive than heuristic methods for database searching, but also more time-consuming. The fastest ap...
Torbjørn Rognes