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» A SAT-Based Approach to Multiple Sequence Alignment
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ISMIR
2004
Springer
138views Music» more  ISMIR 2004»
15 years 5 months ago
MusicBLAST - Gapped Sequence Alignment for MIR
We propose an algorithm, MusicBLAST, for approximate pattern search/matching on symbolic musical data. MusicBLAST is based on the BLAST algorithm, one of the most commonly used al...
Jürgen Kilian, Holger H. Hoos
CF
2009
ACM
15 years 6 months ago
Quantitative analysis of sequence alignment applications on multiprocessor architectures
The exponential growth of databases that contains biological information (such as protein and DNA data) demands great efforts to improve the performance of computational platforms...
Friman Sánchez, Alex Ramírez, Mateo ...
HPDC
2010
IEEE
15 years 1 months ago
Modeling sequence and function similarity between proteins for protein functional annotation
A common task in biological research is to predict function for proteins by comparing sequences between proteins of known and unknown function. This is often done using pair-wise ...
Roger Higdon, Brenton Louie, Eugene Kolker
BMCBI
2008
211views more  BMCBI 2008»
15 years 14 days ago
CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment
Background: Searching for similarities in protein and DNA databases has become a routine procedure in Molecular Biology. The Smith-Waterman algorithm has been available for more t...
Svetlin Manavski, Giorgio Valle
104
Voted
BMCBI
2007
142views more  BMCBI 2007»
15 years 14 days ago
Improving model construction of profile HMMs for remote homology detection through structural alignment
Background: Remote homology detection is a challenging problem in Bioinformatics. Arguably, profile Hidden Markov Models (pHMMs) are one of the most successful approaches in addre...
Juliana S. Bernardes, Alberto M. R. Dávila,...