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» A Sensitive Sequence Comparison Method
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SIAMIS
2010
86views more  SIAMIS 2010»
14 years 10 months ago
Sensitivity Analysis of Multichannel Images Intended for Instantaneous Imaging Spectrometry Applications
This paper presents a sensitivity analysis of using instantaneous multichannel two-dimensional (2D) imaging to achieve instantaneous 2D imaging spectroscopy. A simulated multiple-ï...
Hamed Hamid Muhammed, Fredrik Bergholm
BMCBI
2008
124views more  BMCBI 2008»
14 years 12 months ago
Alignment of protein structures in the presence of domain motions
Background: Structural alignment is an important step in protein comparison. Well-established methods exist for solving this problem under the assumption that the structures under...
Roberto Mosca, Barbara Brannetti, Thomas R. Schnei...
BMCBI
2006
160views more  BMCBI 2006»
14 years 11 months ago
Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources
Background: In order to improve gene prediction, extrinsic evidence on the gene structure can be collected from various sources of information such as genome-genome comparisons an...
Mario Stanke, Oliver Schöffmann, Burkhard Mor...
CSB
2005
IEEE
139views Bioinformatics» more  CSB 2005»
15 years 5 months ago
Using Parallel Algorithms for Searching Molecular Sequence Databases
This work presents the development of algorithms for approximate string matching using parallel methods. It intends to do the maximum of molecular sequences comparisons per unity ...
Carla Correa Tavares dos Reis, Rubem P. Mondaini
82
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NAR
2006
74views more  NAR 2006»
14 years 11 months ago
HHrep: de novo protein repeat detection and the origin of TIM barrels
HHrep is a web server for the de novo identification of repeats in protein sequences, which is based on the pairwise comparison of profile hidden Markov models (HMMs). Its main st...
Johannes Söding, Michael Remmert, Andreas Bie...