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» A Sensitive Sequence Comparison Method
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105
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BIBE
2003
IEEE
116views Bioinformatics» more  BIBE 2003»
15 years 7 months ago
An Assessment of a Metric Space Database Index to Support Sequence Homology
Hierarchical metric-space clustering methods have been commonly used to organize proteomes into taxonomies. Consequently, it is often anticipated that hierarchical clustering can ...
Rui Mao, Weijia Xu, Neha Singh, Daniel P. Miranker
ICASSP
2008
IEEE
15 years 8 months ago
Probabilistic structural alignment of RNA sequences
We propose an algorithm for estimating the common secondary structure, alignment, and posterior base pairing probabilities for two RNA sequences. A definition of structural align...
Arif Ozgun Harmanci, Gaurav Sharma, David H. Mathe...
114
Voted
BMCBI
2006
80views more  BMCBI 2006»
15 years 1 months ago
Quantification of the variation in percentage identity for protein sequence alignments
Background: Percentage Identity (PID) is frequently quoted in discussion of sequence alignments since it appears simple and easy to understand. However, although there are several...
G. P. S. Raghava, Geoffrey J. Barton
119
Voted
ICCV
2003
IEEE
16 years 3 months ago
View-invariant Alignment and Matching of Video Sequences
In this paper, we propose a novel method to establish temporal correspondence between the frames of two videos. 3D epipolar geometry is used to eliminate the distortion generated ...
Cen Rao, Alexei Gritai, Mubarak Shah, Tanveer Fath...
BMCBI
2006
144views more  BMCBI 2006»
15 years 1 months ago
ProFAT: a web-based tool for the functional annotation of protein sequences
Background: The functional annotation of proteins relies on published information concerning their close and remote homologues in sequence databases. Evidence for remote sequence ...
Charles Richard Bradshaw, Vineeth Surendranath, Bi...