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» A Sensitive Sequence Comparison Method
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BMCBI
2008
149views more  BMCBI 2008»
15 years 2 months ago
Clustering of cognate proteins among distinct proteomes derived from multiple links to a single seed sequence
Background: Modern proteomes evolved by modification of pre-existing ones. It is extremely important to comparative biology that related proteins be identified as members of the s...
Adriano Barbosa-Silva, Venkata P. Satagopam, Reinh...
BMCBI
2005
81views more  BMCBI 2005»
15 years 1 months ago
Evolutionary sequence analysis of complete eukaryote genomes
Background: Gene duplication and gene loss during the evolution of eukaryotes have hindered attempts to estimate phylogenies and divergence times of species. Although current meth...
Jaime E. Blair, Prachi Shah, S. Blair Hedges
BMCBI
2006
137views more  BMCBI 2006»
15 years 2 months ago
Improving the accuracy of protein secondary structure prediction using structural alignment
Background: The accuracy of protein secondary structure prediction has steadily improved over the past 30 years. Now many secondary structure prediction methods routinely achieve ...
Scott Montgomerie, Shan Sundararaj, Warren J. Gall...
NAACL
2003
15 years 3 months ago
Shallow Parsing with Conditional Random Fields
Conditional random fields for sequence labeling offer advantages over both generative models like HMMs and classifiers applied at each sequence position. Among sequence labeling...
Fei Sha, Fernando C. N. Pereira
BMCBI
2010
152views more  BMCBI 2010»
15 years 2 months ago
Comparative study of discretization methods of microarray data for inferring transcriptional regulatory networks
Background: Microarray data discretization is a basic preprocess for many algorithms of gene regulatory network inference. Some common discretization methods in informatics are us...
Yong Li, Lili Liu, Xi Bai, Hua Cai, Wei Ji, Dianji...