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» A Sensitive Sequence Comparison Method
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BMCBI
2007
194views more  BMCBI 2007»
15 years 2 months ago
A meta-data based method for DNA microarray imputation
Background: DNA microarray experiments are conducted in logical sets, such as time course profiling after a treatment is applied to the samples, or comparisons of the samples unde...
Rebecka Jörnsten, Ming Ouyang, Hui-Yu Wang
RECOMB
2006
Springer
16 years 2 months ago
Domain Architecture in Homolog Identification
Homology identification is the first step for many genomic studies. Current methods, based on sequence comparison, can result in a substantial number of mis-assignments due to the ...
Nan Song, R. D. Sedgewick, Dannie Durand
123
Voted
BMCBI
2006
111views more  BMCBI 2006»
15 years 2 months ago
Tools for integrated sequence-structure analysis with UCSF Chimera
Background: Comparing related structures and viewing the structures in the context of sequence alignments are important tasks in protein structure-function research. While many pr...
Elaine C. Meng, Eric F. Pettersen, Gregory S. Couc...
BMCBI
2007
135views more  BMCBI 2007»
15 years 2 months ago
RECOVIR: An application package to automatically identify some single stranded RNA viruses using capsid protein residues that un
Background: Most single stranded RNA (ssRNA) viruses mutate rapidly to generate large number of strains having highly divergent capsid sequences. Accurate strain recognition in un...
Dianhui Zhu, George E. Fox, Sugoto Chakravarty
122
Voted
SIAMIS
2010
155views more  SIAMIS 2010»
14 years 8 months ago
Smoothing Nonlinear Conjugate Gradient Method for Image Restoration Using Nonsmooth Nonconvex Minimization
Image restoration problems are often converted into large-scale, nonsmooth and nonconvex optimization problems. Most existing minimization methods are not efficient for solving su...
Xiaojun Chen, Weijun Zhou