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» A Sensitive Sequence Comparison Method
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PET
2004
Springer
15 years 2 months ago
Secure Outsourcing of Sequence Comparisons
Internet computing technologies, like grid computing, enable a weak computational device connected to such a grid to be less limited by its inadequate local computational, storage,...
Mikhail J. Atallah, Jiangtao Li
RECOMB
2003
Springer
15 years 9 months ago
Designing seeds for similarity search in genomic DNA
Large-scale comparison of genomic DNA is of fundamental importance in annotating functional elements of genomes. To perform large comparisons efficiently, BLAST (Methods: Companio...
Jeremy Buhler, Uri Keich, Yanni Sun
BMCBI
2010
115views more  BMCBI 2010»
14 years 9 months ago
Non-coding RNA detection methods combined to improve usability, reproducibility and precision
Background: Non-coding RNAs gain more attention as their diverse roles in many cellular processes are discovered. At the same time, the need for efficient computational prediction...
Peter Raasch, Ulf Schmitz, Nadja Patenge, Julio Ve...
BIBE
2008
IEEE
142views Bioinformatics» more  BIBE 2008»
15 years 4 months ago
Optimizing performance, cost, and sensitivity in pairwise sequence search on a cluster of PlayStations
— The Smith-Waterman algorithm is a dynamic programming method for determining optimal local alignments between nucleotide or protein sequences. However, it suffers from quadrati...
Ashwin M. Aji, Wu-chun Feng
BMCBI
2006
85views more  BMCBI 2006»
14 years 9 months ago
On single and multiple models of protein families for the detection of remote sequence relationships
Background: The detection of relationships between a protein sequence of unknown function and a sequence whose function has been characterised enables the transfer of functional a...
James A. Casbon, Mansoor A. S. Saqi