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» A Sensitive Sequence Comparison Method
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BMCBI
2005
137views more  BMCBI 2005»
15 years 3 months ago
A configuration space of homologous proteins conserving mutual information and allowing a phylogeny inference based on pair-wise
Background: Popular methods to reconstruct molecular phylogenies are based on multiple sequence alignments, in which addition or removal of data may change the resulting tree topo...
Olivier Bastien, Philippe Ortet, Sylvaine Roy, Eri...
148
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ISLPED
2006
ACM
99views Hardware» more  ISLPED 2006»
15 years 9 months ago
Thermal via allocation for 3D ICs considering temporally and spatially variant thermal power
All existing methods for thermal-via allocation are based on a steady-state thermal analysis and may lead to excessive number of thermal vias. This paper develops an accurate and ...
Hao Yu, Yiyu Shi, Lei He, Tanay Karnik
BMCBI
2010
110views more  BMCBI 2010»
15 years 4 months ago
MultiRTA: A simple yet reliable method for predicting peptide binding affinities for multiple class II MHC allotypes
Background: The binding of peptide fragments of antigens to class II MHC is a crucial step in initiating a helper T cell immune response. The identification of such peptide epitop...
Andrew J. Bordner, Hans D. Mittelmann
BMCBI
2006
161views more  BMCBI 2006»
15 years 3 months ago
A method for rapid similarity analysis of RNA secondary structures
Background: Owing to the rapid expansion of RNA structure databases in recent years, efficient methods for structure comparison are in demand for function prediction and evolution...
Na Liu, Tianming Wang
EDM
2009
116views Data Mining» more  EDM 2009»
15 years 1 months ago
Determining the Significance of Item Order In Randomized Problem Sets
Researchers who make tutoring systems would like to know which sequences of educational content lead to the most effective learning by their students. The majority of data collecte...
Zachary A. Pardos, Neil T. Heffernan