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» A Sensitive Sequence Comparison Method
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BMCBI
2010
227views more  BMCBI 2010»
15 years 2 months ago
Accurate and efficient gp120 V3 loop structure based models for the determination of HIV-1 co-receptor usage
Background: HIV-1 targets human cells expressing both the CD4 receptor, which binds the viral envelope glycoprotein gp120, as well as either the CCR5 (R5) or CXCR4 (X4) co-recepto...
Majid Masso, Iosif I. Vaisman
BMCBI
2008
116views more  BMCBI 2008»
15 years 2 months ago
IgTM: An algorithm to predict transmembrane domains and topology in proteins
Background: Due to their role of receptors or transporters, membrane proteins play a key role in many important biological functions. In our work we used Grammatical Inference (GI...
Piedachu Peris, Damián López, Marcel...
ECIR
2007
Springer
15 years 3 months ago
Combination of Document Priors in Web Information Retrieval
Query-independent features (also called document priors), such as the number of incoming links to a document, its Page-Rank, or the type of its associated URL, have been successfu...
Jie Peng, Iadh Ounis
BMCBI
2007
109views more  BMCBI 2007»
15 years 2 months ago
A domain-based approach to predict protein-protein interactions
Background: Knowing which proteins exist in a certain organism or cell type and how these proteins interact with each other are necessary for the understanding of biological proce...
Mudita Singhal, Haluk Resat
BMCBI
2007
106views more  BMCBI 2007»
15 years 2 months ago
Constructing a meaningful evolutionary average at the phylogenetic center of mass
Background: As a consequence of the evolutionary process, data collected from related species tend to be similar. This similarity by descent can obscure subtler signals in the dat...
Eric A. Stone, Arend Sidow