Sciweavers

280 search results - page 5 / 56
» A Sequence Alignment Model Based on the Averaged Perceptron
Sort
View
NAR
2006
128views more  NAR 2006»
14 years 9 months ago
Expresso: automatic incorporation of structural information in multiple sequence alignments using 3D-Coffee
Expresso is a multiple sequence alignment server that aligns sequences using structural information. The user only needs to provide sequences. The server runs BLAST to identify cl...
Fabrice Armougom, Sébastien Moretti, Olivie...
ACL
2007
14 years 11 months ago
A Comparative Study of Parameter Estimation Methods for Statistical Natural Language Processing
This paper presents a comparative study of five parameter estimation algorithms on four NLP tasks. Three of the five algorithms are well-known in the computational linguistics com...
Jianfeng Gao, Galen Andrew, Mark Johnson, Kristina...
STOC
2000
ACM
156views Algorithms» more  STOC 2000»
15 years 2 months ago
Near optimal multiple alignment within a band in polynomial time
Multiple sequence alignment is a fundamental problem in computational biology. Because of its notorious difficulties, aligning sequences within a constant band (c-diagonal) is a ...
Ming Li, Bin Ma, Lusheng Wang
BMCBI
2006
86views more  BMCBI 2006»
14 years 9 months ago
MCALIGN2: Faster, accurate global pairwise alignment of non-coding DNA sequences based on explicit models of indel evolution
Background: Non-coding DNA sequences comprise a very large proportion of the total genomic content of mammals, most other vertebrates, many invertebrates, and most plants. Unravel...
Jun Wang, Peter D. Keightley, Toby Johnson
IPPS
2003
IEEE
15 years 2 months ago
Using Hybrid Alignment for Iterative Sequence Database Searches
Progressive sequence model refinement by means of iterative searches is an effective technique for high sensitivity database searches and is currently employed in popular tools s...
Yuheng Li, Mario Lauria, Ralf Bundschuh