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BIBM
2008
IEEE
112views Bioinformatics» more  BIBM 2008»
15 years 4 months ago
Fast Alignments of Metabolic Networks
Network alignments are extensively used for comparing, exploring, and predicting biological networks. Existing alignment tools are mostly based on isomorphic and homeomorphic embe...
Qiong Cheng, Piotr Berman, Robert W. Harrison, Ale...
BMCBI
2002
126views more  BMCBI 2002»
14 years 9 months ago
RIO: Analyzing proteomes by automated phylogenomics using resampled inference of orthologs
Background: When analyzing protein sequences using sequence similarity searches, orthologous sequences (that diverged by speciation) are more reliable predictors of a new protein&...
Christian M. Zmasek, Sean R. Eddy
VLDB
2001
ACM
148views Database» more  VLDB 2001»
15 years 2 months ago
Indexing and Querying XML Data for Regular Path Expressions
With the advent of XML as a standard for data representation and exchange on the Internet, storing and querying XML data becomes more and more important. Several XML query languag...
Quanzhong Li, Bongki Moon
BMCBI
2008
173views more  BMCBI 2008»
14 years 9 months ago
Improved machine learning method for analysis of gas phase chemistry of peptides
Background: Accurate peptide identification is important to high-throughput proteomics analyses that use mass spectrometry. Search programs compare fragmentation spectra (MS/MS) o...
Allison Gehrke, Shaojun Sun, Lukasz A. Kurgan, Nat...
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BMCBI
2006
129views more  BMCBI 2006»
14 years 9 months ago
EGenBio: A Data Management System for Evolutionary Genomics and Biodiversity
Background: Evolutionary genomics requires management and filtering of large numbers of diverse genomic sequences for accurate analysis and inference on evolutionary processes of ...
Laila A. Nahum, Matthew T. Reynolds, Zhengyuan O. ...