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RECOMB
2004
Springer
15 years 10 months ago
A class of edit kernels for SVMs to predict translation initiation sites in eukaryotic mRNAs
The prediction of translation initiation sites (TISs) in eukaryotic mRNAs has been a challenging problem in computational molecular biology. In this paper, we present a new algori...
Haifeng Li, Tao Jiang
ICASSP
2008
IEEE
15 years 4 months ago
Joint base-calling of two DNA sequences with factor graphs
—Automated estimation of DNA base-sequences is an important step in genomics and in many other emerging fields in biological and medical sciences. Current automated sequencers p...
Xiaomeng Shi, Desmond S. Lun, Jim Meldrim, Ralf K&...
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BMEI
2008
IEEE
15 years 4 months ago
A New Approach for Tree Alignment Based on Local Re-Optimization
Multiple sequence alignment is the most fundamental task in bioinformatics and computational biology. In this paper, we present a new algorithm to conduct multiple sequences align...
Feng Yue, Jijun Tang
SIGCOMM
1994
ACM
15 years 1 months ago
An Algorithm for Lossless Smoothing of MPEG Video
Interframe compression techniques, such as those used in MPEG video, give rise to a coded bit stream where picture sizes di er by a factor of 10 or more. As a result, bu ering is ...
Simon S. Lam, Simon Chow, David K. Y. Yau
WABI
2009
Springer
128views Bioinformatics» more  WABI 2009»
15 years 4 months ago
A General Framework for Local Pairwise Alignment Statistics with Gaps
We present a novel dynamic programming framework that allows one to compute tight upper bounds for the p-values of gapped local alignments in pseudo–polynomial time. Our algorith...
Pasi Rastas