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IPPS
2010
IEEE
14 years 9 months ago
A scalable algorithm for maintaining perpetual system connectivity in dynamic distributed systems
We investigate the problem of maintaining a topology with small degree as well as small diameter in a dynamic distributed system such that the system always stays connected and pr...
Tarun Bansal, Neeraj Mittal
JCC
2006
110views more  JCC 2006»
14 years 11 months ago
Using internal and collective variables in Monte Carlo simulations of nucleic acid structures: Chain breakage/closure algorithm
: This article describes a method for solving the geometric closure problem for simplified models of nucleic acid structures by using the constant bond lengths approximation. The r...
Heinz Sklenar, Daniel Wüstner, Remo Rohs
CSB
2003
IEEE
121views Bioinformatics» more  CSB 2003»
15 years 5 months ago
Epitope Prediction Algorithms for Peptide based Vaccine Design
Peptide-based vaccines, in which small peptides derived from target proteins (epitopes) are used to provoke an immune reaction, have attracted considerable attention recently as a...
Liliana Florea, Bjarni V. Halldórsson, Oliv...
SPIRE
1998
Springer
15 years 4 months ago
Direct Pattern Matching on Compressed Text
We present a fast compression and decompression technique for natural language texts. The novelty is that the exact search can be done on the compressed text directly, using any k...
Edleno Silva de Moura, Gonzalo Navarro, Nivio Zivi...
HPDC
2010
IEEE
15 years 28 days ago
LogGOPSim: simulating large-scale applications in the LogGOPS model
We introduce LogGOPSim--a fast simulation framework for parallel algorithms at large-scale. LogGOPSim utilizes a slightly extended version of the well-known LogGPS model in combin...
Torsten Hoefler, Timo Schneider, Andrew Lumsdaine