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IPPS
2003
IEEE
15 years 2 months ago
Addressable Procedures for Logic and Arithmetic Operations with DNA Strands
In this paper, we consider addressable procedures with DNA strands for logic and arithmetic operations. Using a theoretical model for DNA computing, we first show a DNA represent...
Akihiro Fujiwara, Ken-ichi Matsumoto, Wei Chen
SODA
2008
ACM
108views Algorithms» more  SODA 2008»
14 years 11 months ago
Dimension augmentation and combinatorial criteria for efficient error-resistant DNA self-assembly
DNA self-assembly has emerged as a rich and promising primitive for nano-technology. Experimental and analytical evidence indicates that such systems are prone to errors, and acco...
Ho-Lin Chen, Ashish Goel, Chris Luhrs
NAR
2006
107views more  NAR 2006»
14 years 9 months ago
CorGen - measuring and generating long-range correlations for DNA sequence analysis
CorGen is a web server that measures long-range correlations in the base composition of DNA and generates random sequences with the same correlation parameters. Long-range correla...
Philipp W. Messer, Peter F. Arndt
DNA
2006
Springer
129views Bioinformatics» more  DNA 2006»
15 years 1 months ago
P Systems with Active Membranes Characterize PSPACE
P system is a natural computing model inspired by behavior of living cells and their membranes. We show that (semi-)uniform families of P systems with active membranes can solve i...
Petr Sosík, Alfonso Rodríguez-Pat&oa...
BMCBI
2007
247views more  BMCBI 2007»
14 years 9 months ago
A survey of DNA motif finding algorithms
Background: Unraveling the mechanisms that regulate gene expression is a major challenge in biology. An important task in this challenge is to identify regulatory elements, especi...
Modan K. Das, Ho-Kwok Dai