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165
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ICLP
2011
Springer
14 years 6 months ago
Minimizing the overheads of dependent {AND}-parallelism
Parallel implementations of programming languages need to control synchronization overheads. Synchronization is essential for ensuring the correctness of parallel code, yet it add...
Peter Wang, Zoltan Somogyi
122
Voted
BMCBI
2005
92views more  BMCBI 2005»
15 years 3 months ago
A restraint molecular dynamics and simulated annealing approach for protein homology modeling utilizing mean angles
Background: We have developed the program PERMOL for semi-automated homology modeling of proteins. It is based on restrained molecular dynamics using a simulated annealing protoco...
Andreas Möglich, Daniel Weinfurtner, Till Mau...
177
Voted
BMCBI
2002
108views more  BMCBI 2002»
15 years 3 months ago
A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure
Background: Covariance models (CMs) are probabilistic models of RNA secondary structure, analogous to profile hidden Markov models of linear sequence. The dynamic programming algo...
Sean R. Eddy
HPDC
1997
IEEE
15 years 7 months ago
PARDIS: A Parallel Approach to CORBA
This paper describes PARDIS, a system containing explicit support for interoperability of PARallel DIStributed applications. PARDIS is based on the Common Object Request Broker Ar...
Katarzyna Keahey, Dennis Gannon
138
Voted
BMCBI
2010
112views more  BMCBI 2010»
15 years 3 months ago
A parameter-adaptive dynamic programming approach for inferring cophylogenies
Background: Coevolutionary systems like hosts and their parasites are commonly used model systems for evolutionary studies. Inferring the coevolutionary history based on given phy...
Daniel Merkle, Martin Middendorf, Nicolas Wieseke