Parallel implementations of programming languages need to control synchronization overheads. Synchronization is essential for ensuring the correctness of parallel code, yet it add...
Background: We have developed the program PERMOL for semi-automated homology modeling of proteins. It is based on restrained molecular dynamics using a simulated annealing protoco...
Background: Covariance models (CMs) are probabilistic models of RNA secondary structure, analogous to profile hidden Markov models of linear sequence. The dynamic programming algo...
This paper describes PARDIS, a system containing explicit support for interoperability of PARallel DIStributed applications. PARDIS is based on the Common Object Request Broker Ar...
Background: Coevolutionary systems like hosts and their parasites are commonly used model systems for evolutionary studies. Inferring the coevolutionary history based on given phy...