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» A Structured Demonstration of Program Comprehension Tools
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105
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BMCBI
2008
123views more  BMCBI 2008»
14 years 11 months ago
PocketMatch: A new algorithm to compare binding sites in protein structures
Background: Recognizing similarities and deriving relationships among protein molecules is a fundamental requirement in present-day biology. Similarities can be present at various...
Kalidas Yeturu, Nagasuma Chandra
107
Voted
APSEC
2009
IEEE
15 years 3 months ago
Sequence Diagram Slicing
Software visualization with sequence diagrams is one of the promising techniques aimed at helping developers comprehend the behavior of object-oriented systems effectively. However...
Kunihiro Noda, Takashi Kobayashi, Kiyoshi Agusa, S...
SERVICES
2008
51views more  SERVICES 2008»
15 years 1 months ago
Iterative Workflows for Numerical Simulations in Subsurface Sciences
Numerical simulators are frequently used to assess future risks, support remediation and monitoring program decisions, and assist in design of specific remedial actions with respe...
Jared Chase, Karen Schuchardt, George Chin Jr., Je...
BMCBI
2008
131views more  BMCBI 2008»
14 years 11 months ago
K-OPLS package: Kernel-based orthogonal projections to latent structures for prediction and interpretation in feature space
Background: Kernel-based classification and regression methods have been successfully applied to modelling a wide variety of biological data. The Kernel-based Orthogonal Projectio...
Max Bylesjö, Mattias Rantalainen, Jeremy K. N...
BMCBI
2008
133views more  BMCBI 2008»
14 years 11 months ago
ElliPro: a new structure-based tool for the prediction of antibody epitopes
Background: Reliable prediction of antibody, or B-cell, epitopes remains challenging yet highly desirable for the design of vaccines and immunodiagnostics. A correlation between a...
Julia V. Ponomarenko, Huynh-Hoa Bui, Wei Li, Nicho...