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CEC
2007
IEEE
15 years 4 months ago
A Utile Function Optimizer
Abstract— We recast the problem of unconstrained continuous evolutionary optimization as inference in a fixed graphical model. This approach allows us to address several pervasi...
Christopher K. Monson, Kevin D. Seppi, James L. Ca...
RECOMB
2005
Springer
15 years 10 months ago
Efficient Algorithms for Detecting Signaling Pathways in Protein Interaction Networks
Abstract. The interpretation of large-scale protein network data depends on our ability to identify significant sub-structures in the data, a computationally intensive task. Here w...
Jacob Scott, Trey Ideker, Richard M. Karp, Roded S...
LION
2009
Springer
112views Optimization» more  LION 2009»
15 years 4 months ago
A Graph-Based Semi-supervised Algorithm for Protein Function Prediction from Interaction Maps
Abstract. Protein function prediction represents a fundamental challenge in bioinformatics. The increasing availability of proteomics network data has enabled the development of se...
Valerio Freschi
PPSN
1998
Springer
15 years 2 months ago
Restart Scheduling for Genetic Algorithms
Abstract. In order to escape from local optima, it is standard practice to periodically restart a genetic algorithm according to some restart criteria/policy. This paper addresses ...
Alex S. Fukunaga
GECCO
2004
Springer
132views Optimization» more  GECCO 2004»
15 years 3 months ago
Optimizing Topology and Parameters of Gene Regulatory Network Models from Time-Series Experiments
Abstract. In this paper we address the problem of finding gene regulatory networks from experimental DNA microarray data. Different approaches to infer the dependencies of gene r...
Christian Spieth, Felix Streichert, Nora Speer, An...