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» A Theory of Expressiveness in Mechanisms
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BMCBI
2006
172views more  BMCBI 2006»
14 years 10 months ago
A novel scoring schema for peptide identification by searching protein sequence databases using tandem mass spectrometry data
Background: Tandem mass spectrometry (MS/MS) is a powerful tool for protein identification. Although great efforts have been made in scoring the correlation between tandem mass sp...
Zhuo Zhang, Shiwei Sun, Xiaopeng Zhu, Suhua Chang,...
CORR
2006
Springer
107views Education» more  CORR 2006»
14 years 10 months ago
Dense Gaussian Sensor Networks: Minimum Achievable Distortion and the Order Optimality of Separation
We investigate the optimal performance of dense sensor networks by studying the joint source-channel coding problem. The overall goal of the sensor network is to take measurements...
Nan Liu, Sennur Ulukus
JAR
2006
236views more  JAR 2006»
14 years 9 months ago
Deciding Boolean Algebra with Presburger Arithmetic
We describe an algorithm for deciding the first-order multisorted theory BAPA, which combines 1) Boolean algebras of sets of uninterpreted elements (BA) and 2) Presburger arithmeti...
Viktor Kuncak, Huu Hai Nguyen, Martin C. Rinard
IPL
2007
99views more  IPL 2007»
14 years 9 months ago
Substitutions into propositional tautologies
We prove that there is a polynomial time substitution (y1, . . . , yn) := g(x1, . . . , xk) with k << n such that whenever the substitution instance A(g(x1, . . . , xk)) of ...
Jan Krajícek
BMCBI
2005
137views more  BMCBI 2005»
14 years 9 months ago
A configuration space of homologous proteins conserving mutual information and allowing a phylogeny inference based on pair-wise
Background: Popular methods to reconstruct molecular phylogenies are based on multiple sequence alignments, in which addition or removal of data may change the resulting tree topo...
Olivier Bastien, Philippe Ortet, Sylvaine Roy, Eri...