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TREC
2001
14 years 10 months ago
Observations of Searchers: OHSU TREC 2001 Interactive Track
The goal of the TREC 2001 Interactive Track was to carry out observational experiments of Web-based searching to develop hypotheses for experiments in subsequent years. Each parti...
William R. Hersh, Lynetta Sacherek, Daniel Olson
ISMB
1996
14 years 10 months ago
A Knowledge-Based Method for Protein Structure Refinement and Prediction
The native conformation of a protein, in a given environment, is determined entirely by the various interatomic interactions dictated by the amino acid sequence (1-3). We describe...
Shankar Subramaniam, David K. Tcheng, James M. Fen...
BMCBI
2010
183views more  BMCBI 2010»
14 years 9 months ago
SOPRA: Scaffolding algorithm for paired reads via statistical optimization
Background: High throughput sequencing (HTS) platforms produce gigabases of short read (<100 bp) data per run. While these short reads are adequate for resequencing application...
Adel Dayarian, Todd P. Michael, Anirvan M. Sengupt...
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BMCBI
2010
126views more  BMCBI 2010»
14 years 9 months ago
A boosting method for maximizing the partial area under the ROC curve
Background: The receiver operating characteristic (ROC) curve is a fundamental tool to assess the discriminant performance for not only a single marker but also a score function c...
Osamu Komori, Shinto Eguchi
BMCBI
2007
154views more  BMCBI 2007»
14 years 9 months ago
Classification of heterogeneous microarray data by maximum entropy kernel
Background: There is a large amount of microarray data accumulating in public databases, providing various data waiting to be analyzed jointly. Powerful kernel-based methods are c...
Wataru Fujibuchi, Tsuyoshi Kato