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» A Toolbox of Level Set Methods
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121
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BMCBI
2007
128views more  BMCBI 2007»
15 years 3 months ago
Compression-based classification of biological sequences and structures via the Universal Similarity Metric: experimental assess
Background: Similarity of sequences is a key mathematical notion for Classification and Phylogenetic studies in Biology. It is currently primarily handled using alignments. Howeve...
Paolo Ferragina, Raffaele Giancarlo, Valentina Gre...
LSSC
2001
Springer
15 years 7 months ago
On the Parallelization of the Sparse Grid Approach for Data Mining
Abstract. Recently we presented a new approach [5, 6] to the classification problem arising in data mining. It is based on the regularization network approach, but in contrast to ...
Jochen Garcke, Michael Griebel
CSR
2006
Springer
15 years 7 months ago
Fast Motif Search in Protein Sequence Databases
Regular expression pattern matching is widely used in computational biology. Searching through a database of sequences for a motif (a simple regular expression), or its variations...
Elena Zheleva, Abdullah N. Arslan
131
Voted
BMCBI
2010
172views more  BMCBI 2010»
15 years 3 months ago
Comparison of evolutionary algorithms in gene regulatory network model inference
Background: The evolution of high throughput technologies that measure gene expression levels has created a data base for inferring GRNs (a process also known as reverse engineeri...
Alina Sîrbu, Heather J. Ruskin, Martin Crane
BMCBI
2010
189views more  BMCBI 2010»
15 years 3 months ago
High quality protein sequence alignment by combining structural profile prediction and profile alignment using SABERTOOTH
Background: Protein alignments are an essential tool for many bioinformatics analyses. While sequence alignments are accurate for proteins of high sequence similarity, they become...
Florian Teichert, Jonas Minning, Ugo Bastolla, Mar...