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» A Transcriptional Approach to Gene Clustering
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BMCBI
2006
127views more  BMCBI 2006»
14 years 9 months ago
Using local gene expression similarities to discover regulatory binding site modules
Background: We present an approach designed to identify gene regulation patterns using sequence and expression data collected for Saccharomyces cerevisae. Our main goal is to rela...
Bartek Wilczynski, Torgeir R. Hvidsten, Andriy Kry...
NAR
2008
100views more  NAR 2008»
14 years 9 months ago
The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts
Here we report the new features and improvements in our latest release of the H-Invitational Database (H-InvDB; http://www.h-invitational.jp/), a comprehensive annotation resource...
BMCBI
2007
138views more  BMCBI 2007»
14 years 9 months ago
A systematic approach to detecting transcription factors in response to environmental stresses
Background: Eukaryotic cells have developed mechanisms to respond to external environmental or physiological changes (stresses). In order to increase the activities of stress-prot...
Li-Hsieh Lin, Hsiao-Ching Lee, Wen-Hsiung Li, Bor-...
ICCSA
2005
Springer
15 years 3 months ago
A Penalized Likelihood Estimation on Transcriptional Module-Based Clustering
In this paper, we propose a new clustering procedure for high dimensional microarray data. Major difficulty in cluster analysis of microarray data is that the number of samples to ...
Ryo Yoshida, Seiya Imoto, Tomoyuki Higuchi
WABI
2001
Springer
162views Bioinformatics» more  WABI 2001»
15 years 2 months ago
A Simple Hyper-Geometric Approach for Discovering Putative Transcription Factor Binding Sites
A central issue in molecular biology is understanding the regulatory mechanisms that control gene expression. The recent flood of genomic and postgenomic data opens the way for co...
Yoseph Barash, Gill Bejerano, Nir Friedman