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» A Transcriptional Approach to Gene Clustering
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KDD
2004
ACM
145views Data Mining» more  KDD 2004»
15 years 10 months ago
Mining coherent gene clusters from gene-sample-time microarray data
Extensive studies have shown that mining microarray data sets is important in bioinformatics research and biomedical applications. In this paper, we explore a novel type of genesa...
Daxin Jiang, Jian Pei, Murali Ramanathan, Chun Tan...
CSB
2003
IEEE
123views Bioinformatics» more  CSB 2003»
15 years 3 months ago
Fourier Harmonic Approach for Visualizing Temporal Patterns of Gene Expression Data
DNA microarray technology provides a broad snapshot of the state of the cell by measuring the expression levels of thousands of genes simultaneously. Visualization techniques can ...
Li Zhang, Aidong Zhang, Murali Ramanathan
NAR
2011
157views Computer Vision» more  NAR 2011»
14 years 21 days ago
PlantTFDB 2.0: update and improvement of the comprehensive plant transcription factor database
We updated the plant transcription factor (TF) database to version 2.0 (PlantTFDB 2.0, http:// planttfdb.cbi.pku.edu.cn) which contains 53 319 putative TFs predicted from 49 speci...
He Zhang, Jinpu Jin, Liang Tang, Yi Zhao, Xiaochen...
ICMLA
2007
14 years 11 months ago
SVMotif: A Machine Learning Motif Algorithm
We describe SVMotif, a support vector machine-based learning algorithm for identification of cellular DNA transcription factor (TF) motifs extrapolated from known TF-gene interact...
Mark A. Kon, Yue Fan, Dustin T. Holloway, Charles ...
BMCBI
2006
216views more  BMCBI 2006»
14 years 10 months ago
Machine learning approaches to supporting the identification of photoreceptor-enriched genes based on expression data
Background: Retinal photoreceptors are highly specialised cells, which detect light and are central to mammalian vision. Many retinal diseases occur as a result of inherited dysfu...
Haiying Wang, Huiru Zheng, David Simpson, Francisc...