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    » A Transcriptional Approach to Gene Clustering
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    BMCBI
    2007
    146views more  BMCBI 2007»
    Bayesian hierarchical model for transcriptional module discovery by jointly modeling gene expression and ChIP-chip data
    13 years 6 months ago
    Bayesian hierarchical model for transcriptional module discovery by jointly modeling gene expression and ChIP-chip data
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    Background: Transcriptional modules (TM) consist of groups of co-regulated genes and transcription factors (TF) regulating their expression. Two high-throughput (HT) experimental ...
    Xiangdong Liu, Walter J. Jessen, Siva Sivaganesan,...
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    PPSN
    2004
    Springer
    86views Distributed And Parallel Com...» more  PPSN 2004»
    Searching Transcriptional Modules Using Evolutionary Algorithms
    13 years 11 months ago
    Searching Transcriptional Modules Using Evolutionary Algorithms
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    The mechanism of gene regulation has been studied intensely for decades. It is important to identify synergistic transcriptional motifs. Its search space is so large that an effici...
    Je-Gun Joung, Sok June Oh, Byoung-Tak Zhang
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    BMCBI
    2006
    122views more  BMCBI 2006»
    Computational reconstruction of transcriptional regulatory modules of the yeast cell cycle
    13 years 6 months ago
    Computational reconstruction of transcriptional regulatory modules of the yeast cell cycle
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    Background: A transcriptional regulatory module (TRM) is a set of genes that is regulated by a common set of transcription factors (TFs). By organizing the genome into TRMs, a liv...
    Wei-Sheng Wu, Wen-Hsiung Li, Bor-Sen Chen
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    BMCBI
    2007
    136views more  BMCBI 2007»
    Prediction of tissue-specific cis-regulatory modules using Bayesian networks and regression trees
    13 years 6 months ago
    Prediction of tissue-specific cis-regulatory modules using Bayesian networks and regression trees
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    Background: In vertebrates, a large part of gene transcriptional regulation is operated by cisregulatory modules. These modules are believed to be regulating much of the tissue-sp...
    Xiaoyu Chen, Mathieu Blanchette
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    BIBE
    2007
    IEEE
    195views Bioinformatics» more  BIBE 2007»
    Finding Clusters of Positive and Negative Coregulated Genes in Gene Expression Data
    14 years 18 days ago
    Finding Clusters of Positive and Negative Coregulated Genes in Gene Expression Data
    Download  alpha.uhasselt.be
    — In this paper, we propose a system for finding partial positive and negative coregulated gene clusters in microarray data. Genes are clustered together if they show the same p...
    Kerstin Koch, Stefan Schönauer, Ivy Jansen, J...
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