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RECOMB
2006
Springer
16 years 2 months ago
Phylogenetic Profiling of Insertions and Deletions in Vertebrate Genomes
Micro-indels are small insertion or deletion events (indels) that occur during genome evolution. The study of micro-indels is important, both in order to better understand the unde...
Sagi Snir, Lior Pachter
ACL
2009
14 years 11 months ago
A Statistical Machine Translation Model Based on a Synthetic Synchronous Grammar
Recently, various synchronous grammars are proposed for syntax-based machine translation, e.g. synchronous context-free grammar and synchronous tree (sequence) substitution gramma...
Hongfei Jiang, Muyun Yang, Tiejun Zhao, Sheng Li, ...
IFIP
2004
Springer
15 years 7 months ago
Efficient Algorithms for Handling Molecular Weighted Sequences
Abstract In this paper we introduce the Weighted Suffix Tree, an efficient data structure for computing string regularities in weighted sequences of molecular data. Molecular Wei...
Costas S. Iliopoulos, Christos Makris, Yannis Pana...
132
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BMCBI
2011
14 years 8 months ago
N-gram analysis of 970 microbial organisms reveals presence of biological language models
Background: It has been suggested previously that genome and proteome sequences show characteristics typical of natural-language texts such as “signature-style” word usage ind...
Hatice U. Osmanbeyoglu, Madhavi Ganapathiraju
114
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MT
2010
100views more  MT 2010»
15 years 5 days ago
Exploiting syntactic relationships in a phrase-based decoder: an exploration
Phrase-based decoding is conceptually simple and straightforward to implement, at the cost of drastically oversimplified reordering models. Syntactically aware models make it pos...
Tim Hunter, Philip Resnik